转录组学
Transcriptomics
发布时间：2023-12-28
18 Xia D, Wang Y, Xiao Y, Li W. Applications of
single-cell RNA sequencing in atopic dermatitis and psoriasis. Front
Immunol. 2022 Nov 25;13:1038744. doi: 10.3389/fimmu.2022.1038744. PMID:
36505405; PMCID: PMC9732227.
17 Sultana A, Alam MS, Liu X, Sharma R, Singla RK,
Gundamaraju R, Shen B. Single-cell RNA-seq analysis to identify
potential biomarkers for diagnosis, and prognosis of non-small cell lung
cancer by using comprehensive bioinformatics approaches. Transl Oncol.
2022 Nov 16;27:101571. doi: 10.1016/j.tranon.2022.101571. Epub ahead of
print. PMID: 36401966.
16 Lin Y, Qi X, Chen J, Shen B. Multivariate
competing endogenous RNA network characterization for cancer microRNA
biomarker discovery: a novel bioinformatics model with application to
prostate cancer metastasis. Precis Clin Med. 2022 Jan 10;5(1):pbac001.
doi: 10.1093/pcmedi/pbac001. PMID: 35821682; PMCID: PMC9267254.
15 Lin Y, Wang L, Ge W, Hui Y, Zhou Z, Hu L, Pan H,
Huang Y, Shen B. Multi-omics network characterization reveals novel
microRNA biomarkers and mechanisms for diagnosis and subtyping of kidney
transplant rejection. J Transl Med. 2021 Aug 13;19(1):346. doi:
10.1186/s12967-021-03025-8. PMID: 34389032; PMCID: PMC8361655.
14 Qian F, Wang J, Wang Y, Gao Q, Yan W, Lin Y,
Shen L, Xie Y, Jiang X, Shen B. MiR-378a-3p as a putative biomarker for
hepatocellular carcinoma diagnosis and prognosis: Computational
screening with experimental validation. Clin Transl Med. 2021
Feb;11(2):e307. doi: 10.1002/ctm2.307. PMID: 33634974; PMCID:
PMC7882078.
13 Lin Y, Miao Z, Zhang X, Wei X, Hou J, Huang Y,
Shen B. Identification of Key MicroRNAs and Mechanisms in Prostate
Cancer Evolution Based on Biomarker Prioritization Model and
Carcinogenic Survey. Front Genet. 2021 Jan 15;11:596826. doi:
10.3389/fgene.2020.596826. PMID: 33519899; PMCID: PMC7844321.
12 Abu-Izneid T, AlHajri N, Mohammed Ibrahim A,
Noushad Javed M, Mustafa Salem K, Hyder Pottoo F, Amjad Kamal M.
Micro-RNAs in the regulation of immune response against SARS COV-2 and
other viral infections. J Adv Res. 2020 Dec 2. doi:
10.1016/j.jare.2020.11.013. Epub ahead of print. PMID: 33282419; PMCID:
PMC7708232.
11 Qi X, Lin Y, Liu X, Chen J, Shen B. Biomarker
Discovery for the Carcinogenic Heterogeneity Between Colon and Rectal
Cancers Based on lncRNA-Associated ceRNA Network Analysis. Front Oncol.
2020 Oct 30;10:535985. doi: 10.3389/fonc.2020.535985. PMID: 33194594;
PMCID: PMC7662689.
10 Singla RK, Sultana A, Alam MS, Shen B.
Regulation of Pain Genes-Capsaicin vs Resiniferatoxin: Reassessment of
Transcriptomic Data. Front Pharmacol. 2020 Oct 29;11:551786. doi:
10.3389/fphar.2020.551786. PMID: 33192502; PMCID: PMC7658921.
9 Mo D, Li X, Raabe CA, Rozhdestvensky TS,
Skryabin BV, Brosius J. Circular RNA Encoded Amyloid Beta peptides-A
Novel Putative Player in Alzheimer's Disease. Cells. 2020 Sep
29;9(10):E2196. doi: 10.3390/cells9102196. PMID: 33003364.
8 Qi X, Lin Y, Chen J, Shen B. The landscape of
emerging ceRNA crosstalks in colorectal cancer: Systems biological
perspectives and translational applications. Clin Transl Med. 2020
Aug;10(4):e153. doi: 10.1002/ctm2.153. PMID: 32898321; PMCID:
PMC7426901.
7 Hu H, He X, Zhang Y, Wu R, Chen J, Lin Y, Shen
B. MicroRNA Alterations for Diagnosis, Prognosis, and Treatment of
Osteoporosis: A Comprehensive Review and Computational Functional
Survey. Front Genet. 2020 Mar 3;11:181. doi: 10.3389/fgene.2020.00181.
PMID: 32194637; PMCID: PMC7063117.
6 Pande A, Makalowski W, Brosius J, Raabe CA.
Enhancer occlusion transcripts regulate the activity of human enhancer
domains via transcriptional interference: a computational perspective.
Nucleic Acids Res. 2020 Apr 17;48(7):3435-3454. doi:
10.1093/nar/gkaa026. PMID: 32133533; PMCID: PMC7144904.
5 Wu R, Lin Y, Liu X, Zhan C, He H, Shi M, Jiang
Z, Shen B. Phenotype-genotype network construction and characterization:
a case study of cardiovascular diseases and associated non-coding RNAs.
Database (Oxford). 2020 Jan 1;2020:baz147. doi:
10.1093/database/baz147. PMID: 31942979; PMCID: PMC6964217.
4 Qi X, Yu C, Wang Y, Lin Y, Shen B. Network
vulnerability-based and knowledge-guided identification of microRNA
biomarkers indicating platinum resistance in high-grade serous ovarian
cancer. <i>Clin Transl Med</i>. 2019 Oct 29;8(1):28. doi:
10.1186/s40169-019-0245-6. PMID: 31664600.
3 Mo D, Li X, Raabe CA, Cui D, Vollmar JF,
Rozhdestvensky TS, Skryabin BV, Brosius J. A universal approach to
investigate circRNA protein coding function. <i>Sci Rep</i>.
2019 Aug 12;9(1):11684. doi: 10.1038/s41598-019-48224-y. PMID:
31406268; PMCID: PMC6690939.
2 Qi X, Lin Y, Chen J, Shen B. Decoding competing
endogenous RNA networks for cancer biomarker discovery. <i>Brief
Bioinform</i>. 2019 Jan 30;10.1093/bib/bbz006. doi:
10.1093/bib/bbz006. [Epub ahead of print]. PMID: 30715152.
1 Lin Y, Chen F, Shen L, Tang X, Du C, Sun Z, Ding
H, Chen J, Shen B. Biomarker microRNAs for prostate cancer metastasis:
screened with a network vulnerability analysis model. <i>J
Transl Med</i>. 2018 May 21;16(1):134. doi:
10.1186/s12967-018-1506-7. PMID: 29784056; PMCID: PMC5963164.
